Scaffold Ga0209400_1004136

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1004136
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10346
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F010227	Metagenome / Metatranscriptome	306	Y
F010760	Metagenome / Metatranscriptome	299	Y
F090382	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100413615	F000652	AGGAG	MKKVIVRTQLYQELEVPESWDRYDVYDFLAEHQSFRTAFQGAGNEVARIVDLGVTEETVTEMGEEAFDE
Ga0209400_100413618	F010760	AGGAG	MIDITKIVKTYNGKIGCMCGCLGKYSYTQDGATNHGPGYDVQDSVNERSVRIMAKKILANPNVEWQDNIAYVEDRLANRMQAIYFKEQA
Ga0209400_100413620	F010227	AGGAG	MQATTFNVSDKLTLATTDTDEDSISTTYDCNVEVQLAGDSIWDCELEAVTVKSIHIHETFYEDDDSSIHIAVCYDVDGVSGEEVEGSWRIYTDNGFSDAISALLGTAVDFTEQGMQDDGYASMEL
Ga0209400_10041367	F090382	GGA	MIRIDPTLNELEVMIVAERLEKNKITSYTLARGNDCIWAYYGSINEYYIFKNGYLVDIQI