NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1003787

Scaffold Ga0209400_1003787


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1003787 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10928
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (30.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F019816Metagenome227Y
F020348Metagenome224N
F025481Metagenome201Y
F033030Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_10037871F025481N/AMTHLTHYQKFQFERFGTILLQDGSSTQNPYDPKLLPKNYDYEDDDYTFTRWVENQIELELLKNEVYED
Ga0209400_100378713F020348GGAMEIEHRNYLDLHRANYEMVQNGYVRNIDLDILKMYEHIYRKYMNPDFILTVWCSHCIFDMIKRLYEWYDLQPQPKKKNAKGN
Ga0209400_10037874F019816N/AMRELLPFERQMLLAEVYHYAWYNEEAYADLLLFIEKYQNLLEKPVFLTQINNNDTETTHLEPLAFGQNIDTNPGFDEI
Ga0209400_10037875F033030N/AMQEKKWSTGGWKKTTAKGEVINFTINDVKYSMWVNAYKTEDKQPDYKIYVNDFKPKEDAEGLPF
Ga0209400_10037878F011074GGAGMTAFSGERMRNINSIIFKQNLIYLMQLVGINNPGDVKLAILEDWIRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVIDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNSSGIKVWTKEDGALAKKKLMEIITYKTNKMDIISAKQYRDEWTEQWLKNQARAVAVALFFDLQIANNKTSFK
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