Scaffold Ga0209400_1003260

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1003260
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11883
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F043281	Metagenome / Metatranscriptome	156	N
F082352	Metagenome	113	N
F098901	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10032601	F043281	N/A	GLHPNHFAEQTWLNVMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLAGQIKEDEAKLVELGR
Ga0209400_10032602	F021063	GGAG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRLLRKRGMVKGMKIVKGHQGVPLNDALEYKSSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLQENDYALPTGA
Ga0209400_100326021	F098901	N/A	MKKKMLKRKYKVEYKQTETFVVDVYANNQEQAEKLAGMRFDAGDYQEIGDCEVELNNVYDVTNTDDPFNP
Ga0209400_100326023	F082352	N/A	MSKIKTPDDCGDNKVIFRYDDPAFFVGYYAGETWNGWDCVRVDKPTLDQLRKICEEQGGDVEDYETAEADEFGLYSLDGHCSQVCGFTHKGIFVTNPFQSDCGRFEADPEKDYGFNHEELVEIFGENYKVLKS
Ga0209400_10032604	F020665	AGGA	MRKKARDIKLVKVQEYKAAKIIVEVDDELFEAMAQAGRKHVAKDKVACFSYALNKALLELCEEVK