Scaffold Ga0209400_1002958

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1002958
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12611
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (80.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025480	Metagenome	201	Y
F068826	Metagenome / Metatranscriptome	124	N
F085341	Metagenome / Metatranscriptome	111	Y
F088873	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100295821	F025480	AGGA	MTDRYKEKNCKFCEKLHKKRGLYCCQGCANSDREVSDKVRENMRSVAIDYNRTPEAIAKQKQLHTSLIGMTVEDFAVDIPEIKDLSDYSEFLDGFDRGEKW
Ga0209400_100295824	F068826	N/A	MNEIKQLITDALAVGLSDRSIIELMILEGLPQEACPEILRCVKTTITDQIGQVFK
Ga0209400_100295826	F088873	AGGA	MTYFGMFTTEGNQKVAAIVEFAKTNGAEWENVLPMLRNLADSNPMYREAMDTVVREMVYDACSFTSDFYV
Ga0209400_100295833	F085341	GGA	MKYYSISFPGECGQDVTEIWSEKQILKSAWYKNWVFKMVQGGKTNLIDNQTAIDDWCDVHWAVEVERPDWYSNEGNE