Scaffold Ga0209400_1002813

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1002813
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12992
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F033352	Metagenome / Metatranscriptome	177	N
F042872	Metagenome	157	Y
F043284	Metagenome	156	N
F043823	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100281311	F043823	N/A	MKKAKTNLTIDPKVKRKGERLAKKSGLSLSAYITTLLVKELAKENRR
Ga0209400_100281314	F042872	N/A	MNVPSIINQIKEGDRTVGSNPTPSDLYHYNDLRRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK
Ga0209400_100281319	F033352	N/A	MADLTKFRLIENIEVMACRNSAERVVKAVNRGDLAQAKDLARKHEIAWHLADREFQDLNQPHRNNDFCDDE
Ga0209400_100281330	F043284	AGG	MKLLSVINKLNETRDKAIELVGRTISLASDAGEIISVARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLSSGDADPSLMRQTYLRIGILPDPITMSEPSEPKHFLFPIMKARQWLASRGAKFIAQDKALKEQFLAEAEPIVKAYNDLRGAA
Ga0209400_10028134	F006891	GAG	MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWLVALVSGAVFSTIWELIKRRISL