Scaffold Ga0209400_1002720

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1002720
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13223
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017479	Metagenome / Metatranscriptome	240	Y
F045099	Metagenome / Metatranscriptome	153	N
F077012	Metagenome	117	Y
F085703	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100272014	F017479	AGGAG	MNELKTAAGSWARAFLVAVISMAAAGVTDPKALIAAGVASILPPVLRYLNGNDSALGLKK
Ga0209400_100272018	F085703	GGCGG	MTTIELYYTPPVERYYCLYCSFDMTETMVCTDCNEYKSAVTLQEFVEFNGHYPKLRAVN
Ga0209400_100272019	F077012	GGCGG	MSNQEKMLLICIIGIFISMSVVAFDAYRLGKERGIREGWHRGRSLSRQEFWEE
Ga0209400_10027207	F045099	AGG	MAKLKITFEDGKVVQGEVTPIIEYIFEQHYKIGFHKAFREEELQTQVYFLAHEVCKRSGEPVDARLETFISTLKSVEVLDSDPLS