Scaffold Ga0209400_1002647

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1002647
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13432
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100264710	F024499	N/A	MSEFTECLKESLAALYTQTGTAATIGSTSVTGILSVVSRKENVELGGFDLDLNSTFTIDLTAISSAPTIGSILVANSVSYRVASIDTSIGSYVLGLREV
Ga0209400_10026472	F015449	GAG	MIESFWGTTNIKVAAAAAAYGAKLRPMDPVTRIQKEDGREQVTFWFTDGGEGQDARAEMERTWAEMKSPEDASIRFVRAALENRETLLGLVKRAEKILSIQRGGQTLLVAEKARPELKKALLSRL
Ga0209400_10026474	F007911	AGG	MPAVTMLDRLIEGAFQELLSATVTGQDYHLSHDLTENKPPSIVIKATMGTEEPVQGSGVFSVPVEIILEQSYDDTTLAAHTQKCSKILQAFYDTSSLTARLNATTAIGSARCYNAKLESSEAEADNEERSMKRNFKLAVIAYPNSVAS