NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1002536

Scaffold Ga0209400_1002536


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1002536 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13779
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031023Metagenome / Metatranscriptome183Y
F041637Metagenome / Metatranscriptome159Y
F082341Metagenome113Y
F100534Metagenome102N
F101019Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100253611F031023GAGGMLIDRRTIATVAVCLALGWWLGSSPSSPINPTPQRPVLQAVGRLARIAARVGLWMAMAAEAPPQADGRQLVHAPAVDADGHRVVDHGEGW
Ga0209400_100253616F082341AGGAGMASETMVGDAEAAGAIAGMQELYGLSLPERGQAIRGETKGKRWSGECFHADQFSVIVEIDVDVFITVSPSDIEIE
Ga0209400_100253625F101019GGAGMRVHDFGDAFDVATAGGAPAGEREMLPDGTHNVTIKDASEGPHKFADNNPGDFLHLTLAPNGSYGFVWVSLGSASKDRAQAWLVATALGYTPDGWADAKPSELVGRELRITTKQVVLKSGKTRVFVNDYLPAVTAAPEKKPANRLPAQKVAAARGDEAGGGDDIPF
Ga0209400_10025366F100534GGAGMPDSLDGIVSTTTSLTQTQTGTVGSSTRAVSVSSALPLNSVSGPLVDQLWVSNRSLAVGASETLDLLSLADTIQGATGIQTMRQIRLVRVENNETITGPRIVVGPSGTNGWGRVAGEIGPGGELIAVQQTHAWGVTATERGVTIRATGPTGSVSYSIVIAGTATTGPTGY
Ga0209400_10025367F041637N/AMTPEQLQSAVLALIAGARLKAAGGLTVAEFGSLVVEVIRLAVAGLDTINTLDGPGKKAWTLACVGTLFDAVADSCVPMLAKPIWWVIRPAVRTLVLSAAGGALEQILTLTRAAAPEPTA
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