Scaffold Ga0209400_1001847

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1001847
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16546
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036234	Metagenome	170	Y
F042297	Metagenome / Metatranscriptome	158	Y
F078707	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100184717	F036234	AGGAG	MPDRFDLEQQILDCWRITDEIPMMESQGANSADMTSLAGVYEFKFRKLWETFELMVEQRQFVSAEVKHEL
Ga0209400_100184724	F078707	N/A	MNKLDWYAKWTATAILIVGTAVNSLGYYPAGPLILALGGAIWLAVSIYWREPSLITTNAVMLVTGLVGLAWNYWS
Ga0209400_10018475	F042297	AGGAG	MEFEKAVLEKVATVLESSNQASFFYGSLCVICNIAEAKKVLRKLNQDYNNKVQMSRDGSYGYIFDFVV