Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1001578 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1001578 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18056
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (40.54%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18056

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (40.54%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F089880	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10015782	F075040	N/A	VNGKTPVHKKLMKDTPTVKKETTEKPAVQSELQREIYLRLVSAAASDGKFELGKLPNAQSVVKQGDHLKGVSELLASCYEK
Ga0209400_10015784	F061533	N/A	MSNQLAGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGETYGLKFFNNTQEQSIKGNVVTLSSVRGKHGMTGVSLEHESYEGKNGKVDRDIIKVTATGKVEFDLPSEEPARVSSTPKTIVTDNPEQALDEIVEMHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSSGIVAPKKEEPKADEFDPKDWASAIVPSGSHKGEKLAEIGKKDLTKLYQFYLEKGFTTPFSKCVEQAAIDFNLDAPVEEDADDIPY
Ga0209400_10015785	F089880	N/A	MKKKPELELFSPTQEGIIVPLSKYLTQMAEYVKTEWPGINITETHIKKAWAKVIKNEYLEDDAPDEMLEMFEKMSADLDMAEEMAEERLANPVVEAEVTEDEPVNESLALVESVKDGLELSSFTQKFDIGSGMTQCVPRGQVEMKDWVAAFAFGLTLESGAQWIIGDSVVALENAGHDDVVNQLCANFKKSYPTVSGYARACRAFPSDKRDPMLPFTVYREIGNANFGEDSAKKQGELLEAAKTEKLSSTEVRNRVRSEQGKDDKPMGHRYLLLNVGNFSNSEVLRSMPQEVEEHQLLIDLSDKSWFDPAEGEWLKFLKEQ
Ga0209400_10015787	F015061	N/A	MSEQTPQNETSKAVLEAFTFIKSADETLNERVHAMASLLHTASMMVIKSESRKGEGFECIKYLELAFMYYQNAQFRKRFDEPEKEKDDQPLLFTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1001578

Overview

Ecosystem & Geography

Associated Families

Sequences