Scaffold Ga0209400_1001235

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1001235
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20996
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y
F044969	Metagenome	153	N
F057981	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100123520	F042872	N/A	MKLPIIINQIESGNCTVGSNPTPSDAYRYNDLCRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK
Ga0209400_100123522	F026867	GAG	MSSGRLHDTAMKLRQENRALSLRQLGAAYGLGYVRIKQMQALPGFPLIAGKVIPSDFDQWRLMQTGLSSLHRGDRLRSAVGTTRALKSKSDLPISWQRIASNLKAEAWLHELHAGSESSD
Ga0209400_100123527	F009066	GGAG	VTPEHEKHLAGIVRDLSRDLEAKYRKGQEEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK
Ga0209400_100123531	F006891	N/A	MSTDQIAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWIVALVSGAVFSTIWELLKRRLSF
Ga0209400_10012354	F007747	AGGAG	MKDLGKITFGKSRPAPKQVLVDVTYDAKTAKAFHAFGLKQLKKDQEAVIEYVITKALEGLVKK
Ga0209400_100123540	F044969	AGG	MSASLTVDASKLQKAMKAFIGNTKAEASKEMRIQARMLCVSLANSTQPFGLGNDVKKVGEKAVTRDINHVYKSAASASKEIAKLSLPNGKTKTQNAEQMAKALAALVLGKTGGSKRRRTESAQQLLNRIRQQPYVGTQVGPFDGGKHHESARYGKSKRVPKNQFVRQIVTKDNPLARYFKDKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVNDKSQTGLGTFSKPYVQMTNTIPWINNVISPRTIQKSIDIQVLKMIKRLGIIANYESKKAGL
Ga0209400_100123542	F057981	N/A	MNEEALLQELDNSLISPDRYFKDQKLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKAIRLAWDKDSFREKLMDWIAEMSEEDRNTASIMCSSILSEANKARVNVIPSAIAAPPGNA
Ga0209400_100123545	F007911	N/A	MPAVTMLDRLIEAAFQELLTTTVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTRKCSKVLQAFYDSSPLATRLNATTAIGSARCYNAKVDSIEPEADDEERTMRRTYKLAVIAQPNSIAS