Scaffold Ga0209400_1001097

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1001097
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22761
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (68.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F014488	Metagenome	262	Y
F025739	Metagenome / Metatranscriptome	200	Y
F027777	Metagenome / Metatranscriptome	193	N
F030060	Metagenome	186	N
F093492	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100109711	F006138	AGGAG	MPATTIGQPGLVFGATTEGIGLVQSFSETRNIEKNEIRDRTGDIVGIAYYNATTGYSLSVAVTGSFVVTAGAALAALANATTAVGTGSLRIDSITINKSNDAFVTLDISATGYPNVS
Ga0209400_100109717	F093492	N/A	MGFSIVGSSLNSSTTAKVLQRQNFNKEPNGLETIIEAYAIKTENRDLIVPEKDTLHSAFSSSTKKYSRMVVESVTTEEQDGGITQMLVTYVGLTSSTGLPPAIVRLIPTPGAGVYGPPLVIEAEFVTDVDESLFIKGNISETSSISLGNIGFGSVNQMPPFINGTKMPSNPREPFKSSNNIFINQYFGYCTQSHSCERRGLFLIARVVYVETQITFA
Ga0209400_10010972	F030060	N/A	MIKGVITSEAPQIHWGHLNVAGGRVLDLGCAFWTQAEREEGNGTAKHFLSQKPEFYMGVDVNQVDITTLSQQYPQGKFLCEKADSGFQMDAWITENSITHVKCDIEGDEAHLLQIGNVHNLKEIAIELHYSDRWLEEFKDWFKSIGFECYRHDSVSFCSEISVIYGRLKC
Ga0209400_100109722	F025739	GGTGG	VPRPAEKEMMNKLLTTAGFVTRKSILGFIAGSLICGCATTRPYDLGQVPNQDSISDFIMRWDKLDRTKATQQEYRELYGQTLKALSRSLEETERYKSRLEAQ
Ga0209400_100109731	F027777	AGGAG	MSEELPTFWYEEPANKKLPGETTDEWVVRVFGAFPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ
Ga0209400_100109745	F014488	GGA	MNPGNQDPADSILASYTPDIASEIDTMEDVVKERLSKIKGMNPSISLDELAKLAAQVIQDTIQAEFSGPLLRTKRDDTLDEALLALATNRSPESLTSIAKKYINPLTGKPYTRAALSARLSELSQRTGLVLRVQRSQRVREIYKDRALRIHQRRRQECPKWPKGAWEKGIKKTVGRGKK
Ga0209400_10010975	F005584	GGTGG	VGGLIQTSYFSSDLNYMIIDLWQSVTGLGSNAVSASVTDLAVSSELDVGGDVFRITQSAVVCASMISAPVIGNLCTVSGIERMIAGFSQSTDGLSYTIDLAEITT