Scaffold Ga0209400_1000699

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000699
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28953
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (24.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011078	Metagenome / Metatranscriptome	295	N
F014117	Metagenome / Metatranscriptome	265	Y
F021301	Metagenome / Metatranscriptome	219	N
F026270	Metagenome	198	N
F031025	Metagenome / Metatranscriptome	183	N
F096873	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100069920	F031025	GAG	LKNGRIWNATTYPLFFIVALSITQQPDSYHPAFNDTNFVITESSGGIYTKDNFKFIANVKVAATSVAKLKAPIYYGSTNKGVFNIGRILESYVGNDWNFADTSPSGCTSSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVSYAQAQYLATSSSAKFLTNVRTRYIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPVGSQLTIPGGATYFDVVLKLGGTAKSETYRITIKDECSKYETTDIFFMNRLGGFDSFRFNMVRRDTFEVARKQFQSNPYSLGATYGYATSVRTRSNYHTTASQKVKLTSNWIDDTESVWLRDLIESPVVYMYDGTLYAVNIDNATYEQKKGVQDKLFNLELDVTLSFADKSQRL
Ga0209400_100069922	F026270	N/A	LLFEGGDEGDDRAVDQSPIVWLEIVDKIVKGDRTKWDFILDMPLIEFLNAMAFYKAKTKERQKRLEDAAGKGFNPYIVACLNEML
Ga0209400_100069923	F021301	N/A	MNWKNITIHQLQEIHSCRDMSDLERQMNILAIALNLSMDEVESMTLDKLTTEFAKLSFLNDLPKAPIKFTFKLRGRYFKLAKTPNEMCGHHFIELQQVFKGDVIESLNKIVALLSVEVDFFGRNKKVIDAQAHYEDKCALMMHLPVPLPYTYALFFLEVYPELLKNILCSLKEEMKEMTEQLTKVQ
Ga0209400_100069933	F011078	N/A	LKKAEIIEELSKAEWLTKATKNIAKGNELARELYQFYFLTILQKPDEQIEKIYNDGYIQFWTIRLLYLCINGNRHPFGESRIYDQYDVYDLHLSEEPDLLLEREEDERIEQKRINKINQVTEEAYFYERELFKLWCSGMSARAIHRQTDISVREILRVVKLMKERCTTK
Ga0209400_100069944	F096873	N/A	MILYTTLASIAAVALGLATNVSRAQVRGLSRELRKKTTLVTQHEIKLMSSRSELLGALDKAKTWEGRGEELQRRCLIAENDLASALQKLFALQAKETERRENARLRKAKERAKKREVSNEQR
Ga0209400_10006999	F014117	N/A	MKHFDNDTTAAIATAISGSSAVLHFANTWQPLFALVLAIVGIVSGLFAIRYYAKKIDAIDGKGK