Scaffold Ga0209400_1000557

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000557
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32342
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (72.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F003268	Metagenome / Metatranscriptome	496	Y
F026214	Metagenome / Metatranscriptome	198	Y
F027425	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100055717	F026214	GAGG	MARNYKDYSYFENRPDVVRVFDDLDAYLNYCRIELCDFNPADLYRKDSAIYQAYLNSKRPRRPYQGNKPRFEKRRNDNFSR
Ga0209400_100055721	F003080	GGAG	MNTAKDIADTLIHRAKNLQEFIVERDWALIPAGVVKYDIQHTVGEPARIFVHAMTQEEAERQVDDWFGESVE
Ga0209400_100055735	F003268	AGG	MSQNNIPSNLPSVERLIQRVAVAEKSQQKDIKLSLQEARDLTAELAIITAKLGKTVQEIHQMLSEIRESTTNIDVKFDGGTF
Ga0209400_10005578	F027425	AGG	MIKGLTGTCGVTVSAGNTALPYVGPNTSNPMTGMMRINGTEIEVFNGSSWQQLSTSYATVSLDQDILDTVQWARKKRDEEMKWKSLANDNKAVKIALDNLEQARQQLELTTILAREYETT