Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000461 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1000461 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35615
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (83.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

35615

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (83.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002097	Metagenome	593	Y
F010601	Metagenome	301	Y
F018508	Metagenome	234	N
F021491	Metagenome / Metatranscriptome	218	Y
F023804	Metagenome	208	Y
F036595	Metagenome	169	Y
F046244	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100046115	F046244	GAG	MIDEERNAMREHIVWLTKELEDTRTKLKIRDELLSELLDPEQLGHAVTNEVRGRIYTILHLQEQ
Ga0209400_100046120	F018508	AGGA	MSKKSLKKVVGGLKQPDFPMNAFDVFMNSRLVELSVVKRDHEKRWGINRLIELVDSEFRIKVWRQAERVFEASVSRDEVKLDRAVGGMVKAYAALEAWAVENGVPEMPAIVAVEHEMQDGSVMVVVGTHHDATLYQQFRPDVQNRHIWTMEELELIMESPVLKETMKIKALIPCAAMVRLDKDAKEFPMGGATGFDDVKSDELEASSLPKVFDTSKIGKNRANKALEEI
Ga0209400_100046144	F002097	N/A	MVDVGNTKLIWWVLIGVAVCLIVAVTSLSYIETMYMKAQLKQEMKELRKLKRELKESK
Ga0209400_100046146	F036595	AGG	MIEFLKELLLAKFNRPKPTVEEVEVQVWAFVVKSITVMVLGIAFGTLWLIGFEKQETELAPIDAIFLEILKAIAFMGVGTMGGISGRKASNAIAKAIVGEDDATK
Ga0209400_100046150	F010601	N/A	MLSQWANGDLELTQELRAGKVPVCIREDYTVYMEFFRGNLWIHVEIRRWSSGVKKDCLKSIALIENLIGKPIVALIREDDIKLVRFAKSFGWSEKCQISLLDGSKAFIYTNKV
Ga0209400_10004617	F021491	N/A	MSVEKKIDEMVLQYILKTEGKARIMSPQDVGKLARDAMHKGAMLGYDSGMKMAQRTHGNELEVAELTVKELTERVKELEMQMIASQQ
Ga0209400_10004619	F023804	AGGAG	MLEDLYRFKCEVEGVTLVCFLEHEPAEFNHGEAPDFSACMNLVNAYCGDIDIAHLLMQSIADHICEEALTTFNSESE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1000461

Overview

Ecosystem & Geography

Associated Families

Sequences