NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000408

Scaffold Ga0209400_1000408


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000408 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37007
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (80.39%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032264Metagenome180Y
F042220Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100040813F032264GGAGGMTDFTKYETQHEVLIDYMHVMIARRDWHGVSDVANDLRELEAEHKKVEE
Ga0209400_100040851F042220N/AGGYMDFIQKQIEASERLYHMMMADHKARFEKLAAVYDLSEHLQKKLAERDAEISELRARLRAYEIIERT

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