Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000370 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1000370 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	38794
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (82.76%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

38794

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (82.76%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100037010	F072014	GGCGG	MSDDFEYLGAPLDVVQALMDRAWDDDVDDDTRQLLELGAKTLEHTLDRCCKLAHVIEKTEAGL
Ga0209400_100037022	F102439	N/A	MGEVQRSLYADEDLPPAKGKRRRMPARLAPEMRKFLTTLARIGARVTWTIELLYNPSIGGQGELCERAKAGDHTLVLDTVREVEYRASQLGDDIEAFMTPPSKLPAEPGHPSRVDAMARRQAARQHLFD
Ga0209400_100037023	F070923	GGAGG	VGDAPGGMLPHLRSRLRQEIGPRAVNAGRAFDEFVDAVARNWNSEHWTKLARSQPESEMAAVKDCKVLIAKVREDVEAMWGDSEQLRSLYSNVGEQTVGMFARLWFESMANRTWMRQACREARRT
Ga0209400_100037040	F098561	AGGA	MAITLGKDCSIMLDGGYIASARNVTLTESARTIDVNAYGSRYSAAYSTGYECTVSVELNDPAEIFSAFSRMHTGTPFTVYGGAAGFSFLAVLTGISETDPIDGVVTCTLEAKMTDPRLTR
Ga0209400_100037041	F056554	AGGA	MAITLGKDGSAPPVGEGIISATFTEECETVDISNRSNIGGSTGAPGRKVSKAGFVTKTWEIECHDPDGLLTSLNAAGTSGSYSVMSVTENIGIDGAVTYNVTLKEF
Ga0209400_100037042	F034165	GAGG	MALGTVEITLGKDVTITGVSNARSCTVTNSASDVDVTKFGDTSRKFRKALIEQTIELECVDAPGVTIGGTFTISGTQTGNATYICTNIGKSSPLDGIETFTVSGSRTVSA
Ga0209400_100037044	F090310	GAG	MSNRLRTIADSLATGLQSVSWAISSTVVQRKNWANIDAENMSVPYVIVVPAGADITRASRMNMQADYTVTVFVGRQVRTDGDVDAMLDLTDAVMLQVRAHAFAGVTWPTGVTSPQTVTVDINPDDALTERNIWRAVITATYRVFEPNYL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1000370

Overview

Ecosystem & Geography

Associated Families

Sequences