NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000287

Scaffold Ga0209400_1000287


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000287 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43829
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005703Metagenome / Metatranscriptome392Y
F009735Metagenome / Metatranscriptome313Y
F016782Metagenome / Metatranscriptome244Y
F031763Metagenome181Y
F053891Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100028724F016782AGGAMLPVREKQMDAHMMSTLYAAATESLVSDASATSTFEKMIAVAFTHSSVDTFAKDLRDTEKQIKKDYEVSSMPGPWRSAKSVIHTAMKLSIKLIDDNGSYCGKTFLQNKIRELKIPKEEVSAEDYANKVIRNLMNVPEGMDALKVFKLVKEFVNASGK
Ga0209400_100028732F009735GAGMTMQTGIVEAISTKDVSTKFGTKPTFSMKVGGTWIKCGFKNPNVAVGYEVEFDGVSGTYGVETKSVNILRKADAAPTPSGATTAPAVAAPKAAYSGYKEKVFPIPALHGDRAIVRQNALARATDLYIAARGGKPFELESSTLDLVVTLARKFEAYTAGDIDMQEAMEETTAEQLS
Ga0209400_100028740F031763AGGAMKLYGYVWTKDKHEPKFFWTESLAREIQKSFGGEVVAVYK
Ga0209400_100028743F053891AGGAGMPRPKTELTKSGRAIGVRLTESEYQQWLKLGAAKWLRKLLQEYKKEAI
Ga0209400_100028748F005703GGAGGVGWIAACVLIAVLLPLLGLLYSDVLEVKQESKAQIEKVEKLRREIEQTKRENK
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Institute for Fundamental Biomedical Research
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