NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000286

Scaffold Ga0209400_1000286


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000286 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43966
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (70.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001091Metagenome / Metatranscriptome781Y
F014362Metagenome263Y
F017642Metagenome / Metatranscriptome239N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100028613F017642N/AMNDRRNFIKGAGIIGAFVVGAASYKQVKEMATEHKDISHLAPPINATTIQFTGAYGEKPKAPEPTMGQHTFYVNGWNEEVTHRVSMTVGKDNRLWMKIGDEWHRVAIES
Ga0209400_100028624F001091N/AMLQTKKENMNIREVAKKLAVEFKMPRAERYDLYLREFDKQVEVLGWVQDPTADMNDYRGREMLFPKRWVTIGVLPEGTMINV
Ga0209400_100028631F014362GAGMGTLWEKLLFWKKKQAMYNEGVDYNFINFKDSDLTGIELLVEEYKGVIYHYHKAKIVEEGEFARLQFGYTIVHPGEQDIDDLTNDPKLHTIMGDILSVIITAQNEQTRTDNNQEFDIQ

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