Scaffold Ga0209400_1000286

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000286
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43966
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (70.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001091	Metagenome / Metatranscriptome	781	Y
F014362	Metagenome	263	Y
F017642	Metagenome / Metatranscriptome	239	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100028613	F017642	N/A	MNDRRNFIKGAGIIGAFVVGAASYKQVKEMATEHKDISHLAPPINATTIQFTGAYGEKPKAPEPTMGQHTFYVNGWNEEVTHRVSMTVGKDNRLWMKIGDEWHRVAIES
Ga0209400_100028624	F001091	N/A	MLQTKKENMNIREVAKKLAVEFKMPRAERYDLYLREFDKQVEVLGWVQDPTADMNDYRGREMLFPKRWVTIGVLPEGTMINV
Ga0209400_100028631	F014362	GAG	MGTLWEKLLFWKKKQAMYNEGVDYNFINFKDSDLTGIELLVEEYKGVIYHYHKAKIVEEGEFARLQFGYTIVHPGEQDIDDLTNDPKLHTIMGDILSVIITAQNEQTRTDNNQEFDIQ