Scaffold Ga0209400_1000054

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000054
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 98860
• Total Scaffold Genes: 133
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (51.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017990	Metagenome / Metatranscriptome	237	Y
F037189	Metagenome / Metatranscriptome	168	Y
F043837	Metagenome / Metatranscriptome	155	Y
F091635	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10000542	F017990	N/A	MPYLNKRNRFVAAAKQYAEANSLDIAAFNKFNLLDIAQSINMKGIPTWVLKDCKTDSKGVYNLTSLIAPVTV
Ga0209400_100005441	F037189	GAG	MPNSKQRITARAHRKRKTRLRNNRHKSLMEAKVGTLRVLDAIGQLPISVKQVRLPNG
Ga0209400_100005463	F091635	GGA	MDNNEDMSEEDILKASEAYLTFVQRFGEYVREMDPDLWSRAREYAADFTKIDGVRVELVDEDEDDRDSEHKNGAD
Ga0209400_100005469	F043837	GGA	MVKRFKSRYGDVRILTLLEDGSYKVEGRTLYTRHGDGLFDFEGGPCYMVGDRLLDVDDDVIIESLTIDKSVDKEDYAAVIINTRKAKRGKSKI