Scaffold Ga0209400_1000040

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000040
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 119264
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (43.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029103	Metagenome	189	Y
F030429	Metagenome	185	Y
F037070	Metagenome	168	Y
F048777	Metagenome	147	Y
F073550	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100004015	F029103	N/A	MRAAVEGYTNPGGTEAYRKSSVYTDAIASILAFFLAVIILSFAGLWLWNFSVVPLFEFARPAKSIFQILGLMLFVSLIHP
Ga0209400_100004031	F037070	AGG	MSSAIPPISPLGTPKQGGSPSGPYPVMSSTTTPFFPPVCLSTHWDPTRIYSRTVPTELVPLPVDFRPYTKVCLDYRTSAPEVAAPDISDDVVFPSGGDVYPPNRYMNNIDRESLLRRLDRPLGTSDPAQYKPSEKGDMYVDGMLVPVTPKNTTRFIEELAMPQALLRSGTYHCRAEADKKNWDRSPRLFNNTTKQDRYKAPASVEPPRQNVWTNVTRCEVLPVSAHMTQSGNREWGDGTTCELR
Ga0209400_100004045	F048777	N/A	MNVSIPKWVYLVALVLIGIIIYHFTTVKSSVPLSAMAPSPIIKDGFEDKVVLDTAKDVSTHPYTTEPINNMDQYELEAVFDGEGDKQLSKAQINKMTQRYPLDWSNQPPNSSKFQSGQAKYIDSYSAKSSAEELAKPYEAIGDGNLTPPDTIQMEKNEKEILQTYAPKKANDLTTYDIDDADALMRKIYKPKGLTPTVVRKEGNVFEVVSTRQIKNKIEYEDDLDYVPASSNPNPAAGEAIINVPAVATETAAGLDPFYEPTTATRSDRADYTKWTPGLERMFAPTHKITDWIGQPQQQQ
Ga0209400_100004052	F073550	N/A	MAALEMAAGPPGTGEGIPQLHAMTLFDVRLKQDKARHKAYNQILEQALQKVAYSAVQPNQPTFVYYNVPPFVLGLPALDLKDCVVYVVHQLRNQGYEVRFTYPNLLWISWGHHEHKYLMEKNPIIQSMIPKMATQEKRKGPSLVTMRAAATGAAGAGQTLRAADYTPPAGFVETMERPSPYSRTKNLAGGISETQTKSVRFENKRDGLVNVLDELWKI
Ga0209400_100004068	F030429	N/A	MGIVWRCQDYNQSKNAVYKRLEVVAAERGLPLNINRKQWHLDSRVSDEQAQSEELRKDGLPYETSIIHNAFSVARMSLQDRHYIRSIVDSLGENAHVLHGDRILILYEADLLSTESVLLLQNLLEMRSESGNISIWLTVRETVPLKLRDWFLDIPIPMSCPHFHPWAAILWDWIQKTRALKKHDIAHVDSIRNCVYAILQRNVRWFDIHQIILELVLEHKEELGPLTTHKILECLVNSPNTATGHTLTSYRIPIAWESLFASLYDILVGTSAKGTVLPLII