Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000007 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1000007 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	230228
Total Scaffold Genes	251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (44.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

230228

Total Scaffold Genes

251 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

111 (44.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F037579	Metagenome / Metatranscriptome	167	Y
F062449	Metagenome	130	Y
F071913	Metagenome	121	Y
F078161	Metagenome	116	Y
F080047	Metagenome	115	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_1000007109	F080047	N/A	MEDPFKVMNHPFEAKENPQVYVESPFSYVSQTPARHMLGLVGGNEVSLPAGNMVDVESDLRGLNIPLTHSPARQYQAPPAEQTTIYRKNTKISTSINVRPRHLPAIQMWPYAPTFAPVAMSVQQCGCPEKY
Ga0209400_1000007132	F037579	GGA	MANAGTLLSDLDSKAPIAGDSDLVKMIYSDMNSGGAAPMGGIQNGPQNPMPPPQSTQSYQMDTVPATAHIIGGNHPTSGDFARMLQSSAPGFPSGGNWASAGSYDQQNGNAQAQIAAQIASIQASQGKSWKSYIGEEMKAPILIAILAFVVNLPFLSVLVAHYAPWMLKASGDMNIYGQLSKALLVGVLFWGTNRIILPLVA
Ga0209400_1000007235	F062449	N/A	MTETVPQSLIQLCETHPDCTFRVGRPHTNQNEVVGTTAADTQDQTPRWGLTTHSIEPRHPLGVWLWLNDPMYRMSPDQLRQRIVLEATTEWQQRCATLDFPRILSKKRALEGFGTMKPESLQAKATMIAMERYCQDEPLLWILLNETGKTISFLDDKTFPREGGYKHIWILREPMWDRLWDASEWSSNSLLSWLKMMEEKSFVVEWPLIPATETQKSMATEYHSMGYSTLGLSKDDLRKKLSRAKAIRRL
Ga0209400_100000767	F078161	N/A	MPNTEAPLDSATTTKVMWSASIEQMLARWGDQAKCFEWMHTEAHSQYSKKAKIIMITSNILTAVSGLSNVIAGGTTINGFQLAWAFGSLSILVSISNMLQEKLAYTTKSVDHQQFSVQWGAIRRKIEEELSIPPDARKDCGTFLKYLRQDINQVSVAGDARIPECIRDACYEKFSKVPNFELPDICGQMEHTRIYIKDEAYSELRDYH
Ga0209400_10000077	F071913	AGG	MKFCPTCNFYLYLKSSGEDGNDNLTRLCVNCGYTETDTKGGLISETLVQQKSSEAFKIMINEFTRQDNTLPHIKMIPCAKETCPSNQGGVERDIIYMTYDVPGKKNLYICNVCGEQWKSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1000007

Overview

Ecosystem & Geography

Associated Families

Sequences