Scaffold Ga0209400_1000003

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000003
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 251310
• Total Scaffold Genes: 335
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (14.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010320	Metagenome / Metatranscriptome	305	Y
F012774	Metagenome / Metatranscriptome	277	Y
F013759	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_1000003250	F013759	N/A	MKVELGISIFSKRETMLGLHLTTHNGVNVKDSQLHSERVVEFSIGIVFAILTIGFVTIGDKIDTPSNVMKAIEAFENELDK
Ga0209400_1000003272	F012774	GGA	MKDTPIILHIDLGNQSVSKWLEQNRYIIFSELVRYAERLIKENLDTIQAIMVSNLSDNIVFILKKESAKLTLDKSMEYFLSIEEYEQCAKIRDLYILIENQKNETTNIKISKSNQRKSKINR
Ga0209400_1000003300	F010320	N/A	MIAFAQKLKKENMNKNNEVFRDDAYNEESKLYSEFMDEVKVHDYSYMMSDDHNVYMRGRNNEKQIQEKLHALIGICRYDGHDLLDEVISVVPQRYNDVDSNGNDLTHRVIRGWFKPYVFDNFEL