Scaffold Ga0209820_1012260

Overview

Basic Information

• Taxon OID: 3300027956
• Scaffold ID: Ga0209820_1012260
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032194	Metagenome / Metatranscriptome	180	N
F060717	Metagenome / Metatranscriptome	132	N
F073146	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209820_10122603	F073146	N/A	MSEPVSQAVMTVTEVAPFQFAIEIEGSDLSLEVSQIMVKFLNDCLTQIHADQKIH
Ga0209820_10122605	F032194	GAGG	MRNKHCMEAFYRTLKEVDIPSGQSMICEHFFAAGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPADDDKE
Ga0209820_10122607	F060717	N/A	ADVQPDNVCFECGKAWGTHPLKSSENHRSWIDQCDVCLKLTAVVDVSEYGYMKENWDGKKVV