Scaffold Ga0209820_1005061

Overview

Basic Information

• Taxon OID: 3300027956
• Scaffold ID: Ga0209820_1005061
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3192
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012771	Metagenome / Metatranscriptome	277	Y
F057925	Metagenome	135	N
F078616	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209820_100506111	F057925	N/A	YRNRTNRAIVVEILADTAELRLGELRWPVVVYRRLDNGTIYVRSRAEFEAKFCPE
Ga0209820_10050615	F012771	AGGAG	MKPKPKRPVAKMFVVSDDTHKRLKEYAKRKGYKLQYVADEAVSEYLKRQESK
Ga0209820_10050616	F078616	GGAGG	VITKKTITSAVAAGWISFPEPKARELSRNWAQPVEAFDSELAYRLWDNGADTDTVARAIGCKRRFVAQIIKEYKR