Scaffold Ga0209820_1000652

Overview

Basic Information

• Taxon OID: 3300027956
• Scaffold ID: Ga0209820_1000652
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8367
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209820_10006523	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSESDSAQANQATEMVKYMINSKNDSYAVIRDWAQDSLLHKNGIVMVSPVREPVTQYKEVEGTRDQLRVFETMATEKGLTVKRQNMRKIDVDLEGVMQEMMNPDDDQGTIQEEVNEAIAANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKAQYPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPMAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPAKHIYEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPNDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCAKGAPFMDAISMENYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFTQAMMSLDPSVPEMFVKLRRPFEDILRVLGVKDVDAYLPTLEEAAKIMQAQAEKGPSAEQQKLQSETDLNKAKIEDTMANTAFTQKKAEDIDTDNMFEALAAKRGKHSAVQID
Ga0209820_10006525	F001059	AGG	MATYDIEALKADLPTAKDLAQFVYDKTGISLDLIGKPKEDQYLVARNALEGKKIPADFQTDLNPYIDRKELIPVDEKKQIPPRPADLPDTGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPVEQIAVGERINKFGQKQPEKYSWLDPRTEEIMLRRPDGTFTEKGRGLYAFCVGEKGGGIWSLIDRNLMNIAEKNVTNPWAXWKITAQPFG
Ga0209820_10006526	F040590	N/A	MSYGKVISGGKAMTNGLTKGINNKLKGFEEGHKRGQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPTNV
Ga0209820_10006527	F099270	AGG	MSTNFLYAQSPNRTGNVSKHAPSKSGGATNVTGPKHGVSGPTGQQGAPKAGGDITGRHQKVQVSTHADYCGTIKNDGYMNKSVKNYLG
Ga0209820_10006528	F012670	AGG	MKKPKDADILFGEIRPEGSLVTSPEELERKKHFMKMKRLEKRAMGLATGEKFPKEEPKPVGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKVXLVFVKCDNPNTFMKG
Ga0209820_10006529	F001915	N/A	MEWTLAHPLHDVDDIVELADSMFGREADGILTRDRNVFRKNVTITSTVQLFDKGKEFLAVCRSVDKSVDNLLAYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKQRVKLIHQMIDQHILWASTWGIPVICSTSIRQEHDGFMRIHKKRGFTVNGSYAWARTADVLKGLTXRSLKMLIFFLVK