Scaffold Ga0209820_1000519

Overview

Basic Information

• Taxon OID: 3300027956
• Scaffold ID: Ga0209820_1000519
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9177
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F085601	Metagenome	111	Y
F086598	Metagenome / Metatranscriptome	110	N
F097203	Metagenome	104	Y
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209820_100051912	F103133	N/A	MRYKIQLSTSTGGWSDLRESSDSQTYETCLFPTRNAALSAREEFGELSEFLETTRIVPAETPETENIYA
Ga0209820_100051915	F085601	N/A	MNYYVMQTSLSIRSKPQLVQWAKTMDEAIEYAQKQLELWREVGVPNPPRYQVHYSGLASKTALWDSLD
Ga0209820_100051919	F097203	N/A	MNYPETIPAAFASDSTLEHAYRLGWNHGHGIACHNVPSIGDSACRYVDWIGLGQTVTAENIAECHEALCFAAESNSREFSPFEFIAHEFNESEDSESLSEAFESGVSDSIRNDLKSYSYAGLA
Ga0209820_100051921	F000922	AGG	MRIGKQAWEKAKALYFAGQSWETIANDLQLNKATLTNKASIEGITKVKREAKAISPKKEISLESLSALVRSKLAADAASTLERIDGYALDGIKDESTREQILGSVAKRSALVFGWSEQGEAASVSINLLGQMPDRIAEIQVTGEPETK
Ga0209820_10005194	F086598	N/A	METDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALQRSSYQEDDDDSCEGFGPKPEQQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKEHLMDQRVTFLNGSGQNGTPEQVAYLQRIETRLGRKIFENPLATT
Ga0209820_10005196	F001964	GGAGG	MIRNQFAPPKFKIQISGAIGWSDLKEKVVSYQTVEFSTRKEADRAAKELNPGEYTQGRIRVVPFEMSEDYDVYPVVERVSEKSKG
Ga0209820_10005198	F002227	N/A	MKLTIQSKQNAQTIVDLFNAIITGECETPGVTPLSIYDDDRHICSLIDADGHQILELIIEREIGDKLVQTGEPETLQ