Basic Information | |
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Taxon OID | 3300027956 Open in IMG/M |
Scaffold ID | Ga0209820_1000519 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9177 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (36.36%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | near Jamestown, North Dakota | |||||||
Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000922 | Metagenome | 833 | Y |
F001964 | Metagenome | 610 | Y |
F002227 | Metagenome | 580 | Y |
F085601 | Metagenome | 111 | Y |
F086598 | Metagenome / Metatranscriptome | 110 | N |
F097203 | Metagenome | 104 | Y |
F103133 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209820_100051912 | F103133 | N/A | MRYKIQLSTSTGGWSDLRESSDSQTYETCLFPTRNAALSAREEFGELSEFLETTRIVPAETPETENIYA |
Ga0209820_100051915 | F085601 | N/A | MNYYVMQTSLSIRSKPQLVQWAKTMDEAIEYAQKQLELWREVGVPNPPRYQVHYSGLASKTALWDSLD |
Ga0209820_100051919 | F097203 | N/A | MNYPETIPAAFASDSTLEHAYRLGWNHGHGIACHNVPSIGDSACRYVDWIGLGQTVTAENIAECHEALCFAAESNSREFSPFEFIAHEFNESEDSESLSEAFESGVSDSIRNDLKSYSYAGLA |
Ga0209820_100051921 | F000922 | AGG | MRIGKQAWEKAKALYFAGQSWETIANDLQLNKATLTNKASIEGITKVKREAKAISPKKEISLESLSALVRSKLAADAASTLERIDGYALDGIKDESTREQILGSVAKRSALVFGWSEQGEAASVSINLLGQMPDRIAEIQVTGEPETK |
Ga0209820_10005194 | F086598 | N/A | METDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALQRSSYQEDDDDSCEGFGPKPEQQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKEHLMDQRVTFLNGSGQNGTPEQVAYLQRIETRLGRKIFENPLATT |
Ga0209820_10005196 | F001964 | GGAGG | MIRNQFAPPKFKIQISGAIGWSDLKEKVVSYQTVEFSTRKEADRAAKELNPGEYTQGRIRVVPFEMSEDYDVYPVVERVSEKSKG |
Ga0209820_10005198 | F002227 | N/A | MKLTIQSKQNAQTIVDLFNAIITGECETPGVTPLSIYDDDRHICSLIDADGHQILELIIEREIGDKLVQTGEPETLQ |
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