NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209820_1000519

Scaffold Ga0209820_1000519


Overview

Basic Information
Taxon OID3300027956 Open in IMG/M
Scaffold IDGa0209820_1000519 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9177
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001964Metagenome610Y
F002227Metagenome580Y
F085601Metagenome111Y
F086598Metagenome / Metatranscriptome110N
F097203Metagenome104Y
F103133Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209820_100051912F103133N/AMRYKIQLSTSTGGWSDLRESSDSQTYETCLFPTRNAALSAREEFGELSEFLETTRIVPAETPETENIYA
Ga0209820_100051915F085601N/AMNYYVMQTSLSIRSKPQLVQWAKTMDEAIEYAQKQLELWREVGVPNPPRYQVHYSGLASKTALWDSLD
Ga0209820_100051919F097203N/AMNYPETIPAAFASDSTLEHAYRLGWNHGHGIACHNVPSIGDSACRYVDWIGLGQTVTAENIAECHEALCFAAESNSREFSPFEFIAHEFNESEDSESLSEAFESGVSDSIRNDLKSYSYAGLA
Ga0209820_100051921F000922AGGMRIGKQAWEKAKALYFAGQSWETIANDLQLNKATLTNKASIEGITKVKREAKAISPKKEISLESLSALVRSKLAADAASTLERIDGYALDGIKDESTREQILGSVAKRSALVFGWSEQGEAASVSINLLGQMPDRIAEIQVTGEPETK
Ga0209820_10005194F086598N/AMETDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALQRSSYQEDDDDSCEGFGPKPEQQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKEHLMDQRVTFLNGSGQNGTPEQVAYLQRIETRLGRKIFENPLATT
Ga0209820_10005196F001964GGAGGMIRNQFAPPKFKIQISGAIGWSDLKEKVVSYQTVEFSTRKEADRAAKELNPGEYTQGRIRVVPFEMSEDYDVYPVVERVSEKSKG
Ga0209820_10005198F002227N/AMKLTIQSKQNAQTIVDLFNAIITGECETPGVTPLSIYDDDRHICSLIDADGHQILELIIEREIGDKLVQTGEPETLQ

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