NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209820_1000044

Scaffold Ga0209820_1000044


Overview

Basic Information
Taxon OID3300027956 Open in IMG/M
Scaffold IDGa0209820_1000044 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33627
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003785Metagenome / Metatranscriptome468Y
F015721Metagenome252N
F030066Metagenome186Y
F053266Metagenome141N
F062712Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209820_100004411F003785GGAMTTIQELEVTVTSHIDVCAVRYEAIHARLKRLEQLMLKVGGAIILILLGALGSMALLLLEAVQK
Ga0209820_100004423F015721GAGMTLTPHSDFEARFRASRPAEIVVATYLLNLGHTVTLPKRRLARDFADRAEYADKGDIYASGKRIEVKHIKHDFGYQAWPFETAAICAKKSFDAADPRPDYYYIVNASMTVAALVDVKTTFADWRVQKIVDRERGYDYDVYAVTPEYLGWRYIDFEERL
Ga0209820_100004429F053266AGGAGMPRKDTFHGFGTFYALGNKFEVRVEYTQDTDGGIILEAADLIGIFLDSDKAASSLNHDIKLDICDLGADAIFELEEIATNDALMNGPYGEDY
Ga0209820_100004433F030066GAGGMGDEFTYFPTKQSQPEKPKPSHNLEHQFHSNQVMWNSAVQESPLNRLKFYDAQLARGVNVNRDRVAELIREAGAAAVLSDRDTIGLVRQLWGEKAVEKLRARVKAGE
Ga0209820_10000445F062712GAGGMNGRRPMNMPMQPDRRPQELARVMAMQERNSSLNSPFPQQAMRSSSAYAGATPNTAPGMPPQAMNFNGPAGPQQYQGPISNPAMSAMAPPQQGAPQIGGMMRPRQPMGAGARGYPSSPGMTTPQGGAYRGDFDGN

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