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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027956 Open in IMG/M |
| Scaffold ID | Ga0209820_1000044 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33627 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | near Jamestown, North Dakota | |||||||
| Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003785 | Metagenome / Metatranscriptome | 468 | Y |
| F015721 | Metagenome | 252 | N |
| F030066 | Metagenome | 186 | Y |
| F053266 | Metagenome | 141 | N |
| F062712 | Metagenome | 130 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209820_100004411 | F003785 | GGA | MTTIQELEVTVTSHIDVCAVRYEAIHARLKRLEQLMLKVGGAIILILLGALGSMALLLLEAVQK |
| Ga0209820_100004423 | F015721 | GAG | MTLTPHSDFEARFRASRPAEIVVATYLLNLGHTVTLPKRRLARDFADRAEYADKGDIYASGKRIEVKHIKHDFGYQAWPFETAAICAKKSFDAADPRPDYYYIVNASMTVAALVDVKTTFADWRVQKIVDRERGYDYDVYAVTPEYLGWRYIDFEERL |
| Ga0209820_100004429 | F053266 | AGGAG | MPRKDTFHGFGTFYALGNKFEVRVEYTQDTDGGIILEAADLIGIFLDSDKAASSLNHDIKLDICDLGADAIFELEEIATNDALMNGPYGEDY |
| Ga0209820_100004433 | F030066 | GAGG | MGDEFTYFPTKQSQPEKPKPSHNLEHQFHSNQVMWNSAVQESPLNRLKFYDAQLARGVNVNRDRVAELIREAGAAAVLSDRDTIGLVRQLWGEKAVEKLRARVKAGE |
| Ga0209820_10000445 | F062712 | GAGG | MNGRRPMNMPMQPDRRPQELARVMAMQERNSSLNSPFPQQAMRSSSAYAGATPNTAPGMPPQAMNFNGPAGPQQYQGPISNPAMSAMAPPQQGAPQIGGMMRPRQPMGAGARGYPSSPGMTTPQGGAYRGDFDGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |