NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209841_1009158

Scaffold Ga0209841_1009158


Overview

Basic Information
Taxon OID3300027942 Open in IMG/M
Scaffold IDGa0209841_1009158 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_30-Apr-14 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057367Metagenome136N
F063694Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209841_10091581F057367GAGMQEDLPTSSGIDLMTWLNFEAAITRNPRVAQSLRDSAAEIGHLRTQLKAAGVHNYNELTSALRDMTRTAEVVLTTPHLQIEQRENARADMAESVRYCKKLMQSA
Ga0209841_10091584F063694N/AITVGSILAADQLRELHGAAKAAQARLRELIQLIELSCIEHIETTGHDIELVDGKRWYVGSEKKIKAIDDTMILQAVLESSGGDVMKLTTGEFGVLCSSPWKNGAVKQLIGESKFNELFLTTTVQSLETGKAAKVLKVVDPAFLKGGTQ

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