NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_115941

Scaffold Ga0208151_115941


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_115941 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101502Metagenome102N
F105516Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1159411F105516N/AMPKALVRVLALGRVSLNLRTFRVIENERLSITDDGAVKCLGKGCSANGVFITLEADRPNARELYDALKKVRVLKIEVEVIDLPGWLLSRLEFLVGGQISGNAKVKYTWRSMPSLEELALVLNDLNTN
Ga0208151_1159412F101502N/AMSQVSKTPIIAFTVILALGLGIVVIGSTSPIKPGIGAVLVLLASMACAPAYAWFRHPGLLITIELGVGVLLVIIIVNWLHGISPLTSLKWYYNALRTLITPLA

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