NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_105707

Scaffold Ga0208151_105707


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_105707 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2203
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011097Metagenome / Metatranscriptome295Y
F045200Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1057071F011097GGAGGMLRDVVLYTSGGTDPFTSLTTGGSPITGNSSNYQFLRFHPNYARLHIYITGLSGTSPSIQFTVGTVAGSNNYTLPPITSPIYIYVIGNENRTIITYLNTNAQVLQQVELPYNIFLNGVYVSWSVAGTSPSITAYIHFEFEDEEEGEE
Ga0208151_1057072F045200N/AKPGAPASQWLDPPVLLVSYDQISRDVVNWADNVFTAAGYTPTSPGVINVPNNVYVTNYGYTTYSHAPSTVTLNFTGTPELKQLHMIYDMLDDTVLMYFSIMVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDNTVEQTFGNALGVTWWTNTLQMQSAPQFAISFDWYKLGGFMGYTPSHGFLPAIYVGNSLYMLYYNYPHGDSLMAIAFADIHKNPAQPQTYYQPILKNYGLDFLAFNGLPENLQSCPSSYGSNSYYCIPILGSVGQLDIFDLGLNIDKFGSIVPGESFGIHGTYIIPITLPPRPDWGGISSMRMKVLYVAPIFHQFQGYGGLSFAWTRDSVEIPFYPEMGTCRPYLTTLPDGKLKVTMGGYHSDNYIDGVAIYLDKSVISPKGKTLVTSPSLIFGQTSPGGSYYVISESPSSTNIIYQGVVTYTFGKKYARIYLNLNANNWGFVNIYTRYRSRSAPDLQQMYGQTPNPNNTSAYYPVVERNFGSLVYLSDYAYGMPFALEYPRTSRFRVDDQVLWVITTNSTSPVWVELEGD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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