NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_102487

Scaffold Ga0208151_102487


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_102487 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4484
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F076264Metagenome / Metatranscriptome118Y
F085905Metagenome111N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1024871F085905N/AMEEQLSFPSSRLSQFDYVGMNAYWLNTRLRYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVL
Ga0208151_1024872F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEKSSTRRNQRAVNGFTVLKQVQNTVKDYLNEVSTSLKAPVIAQLAVEFIGIAMAYVKASNEGDNSYALTGRVAQIATLRATHIIHATTLSCGQVGEIINGMLKKLSGVTADPLTFTEDDGICKATVANPLTKLSVASASTGYTVALTDILKAKTPEEVLMAK
Ga0208151_1024875F087445N/AMSTTSSKPTDELVQRLLNMSEYDLKRVFKMIPIDKRLALALDTIQEYQSIQNKFNNLLNGLAMNAPRVKEVVESARRNAKPMDRFVSMIIDMVETMLKSKAMSLTDEDKEKLREKVKEMIKDEE
Ga0208151_1024877F076264N/AMVNGLQSLFVALIDVFSNAVNAIGSTLASLANPIGYLVGVLAVFGSLISIIYYVFRGKGGVGGLISGIRSVFTSFF

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