Scaffold Ga0208151

Basic Information
Taxon OID	3300027937 Open in IMG/M
Scaffold ID	Ga0208151_101738 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027937 Open in IMG/M

Scaffold ID

Ga0208151_101738 Open in IMG/M

Source Dataset Name

Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6128
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6128

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.7219	Long. (^o)	-110.7021	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Yellowstone National Park

Coordinates

Lat. (^o)

44.7219

Long. (^o)

-110.7021

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F008949	Metagenome / Metatranscriptome	325	Y
F011233	Metagenome / Metatranscriptome	293	N
F021133	Metagenome / Metatranscriptome	220	N
F023140	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208151_1017382	F011233	N/A	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSPSTVPASPGFVAEEVVSAKLPVRVT
Ga0208151_1017383	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTDPFNPLTPTQPGISLVRLGESVPPVRAFNIYVYNYANATLNVQVIANENAKNYAYGNLLDGLNYQSESGYPDFNVGSPVTVASGSLQQPSVQTVQADFYSTSAERYISLALTYSTPPSTGFIRAHIDLFYEGF
Ga0208151_1017386	F008949	GGTGG	MSNQTVTLGTQTITPKVEDLGDSYYIEFQVKVSKYLNNPVNQTIDVKFMCSKYKVVTLQSPLTPNVQTLQKTIQECVEEWYNQHKSVYEVA
Ga0208151_1017388	F023140	GGTGG	LKLHKRILLSNVFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLMLFFYFLGAKFVGIWAVLQKFSVTLPTSLVLTGLVEDVPRNPYLDYVVLFLVGYTISTPLIFLTYRVTRWLYDKKGRLNTPNL
Ga0208151_1017389	F021133	AGGTGG	MTKRDDLIRQIYENGNYVIKRICEMEPKDKMANFSATDCIIGSANTHLALKIAREKGYPQDVIEYLESQSKQEQWHCQLHIGKSPKPYDFKVAQKHREILQKYGIYVWMGVMPLLGEKIALAKAVCWRRSDDPHFANKFATVDEYYHTTYPLLLLYKYATEEELEKIVELQKEYIERIFNLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208151_101738

Overview

Ecosystem & Geography

Associated Families

Sequences