Scaffold Ga0208151

Basic Information
Taxon OID	3300027937 Open in IMG/M
Scaffold ID	Ga0208151_100476 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027937 Open in IMG/M

Scaffold ID

Ga0208151_100476 Open in IMG/M

Source Dataset Name

Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16665
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (16.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16665

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (16.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.7219	Long. (^o)	-110.7021	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Yellowstone National Park

Coordinates

Lat. (^o)

44.7219

Long. (^o)

-110.7021

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021808	Metagenome / Metatranscriptome	217	Y
F062912	Metagenome / Metatranscriptome	130	Y
F077497	Metagenome / Metatranscriptome	117	Y
F090626	Metagenome / Metatranscriptome	108	Y
F097670	Metagenome / Metatranscriptome	104	Y
F099549	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208151_10047612	F099549	N/A	MDTNLQYSYQIPDLKTRFQIDFGNIIEQIVELLTYSDVSSDTRTFDNEELKNKLRAAISYALGLLASTWGYSMSAKVQQDVLVAKNTLIALFDAIMINPELTYIDLLDIYFELIQKVSIILNYGTPIPQPRTGNYEIT
Ga0208151_10047618	F077497	N/A	MDKEQINKIEEITENHLFKEKNTPDYELKKMDVMIKYLIYQQLKELNNNLSLIDEALSIKELEK
Ga0208151_1004762	F090626	N/A	MSRIIKFENIYFGRNSLVKLFANKTHLENHADYDGTVLAFLLDVSDFTNTDTLLSHFAIINGNEIRPILVEWNLRTIHGRLLILLNQLPGTHDTKMLLKKFESAIENQKPEIVKYTASQYAKALTDAKGLRQIYNFLVQRIQQLKSIGIKRSEEEVKRLAEIYR
Ga0208151_10047620	F062912	N/A	MDLTEVLAETYNLFLVSDIIENGSEIDRELINLLANKDYNNIAKTLIYVLMHTLNNDPAYKNIRQIYINEVIDLLYMIDRIGFDNERIMKKFVNLLYQFYSYSLQYKINFITDKEKREWVKAELNELIHII
Ga0208151_10047635	F021808	N/A	MMTEEPSHGTIAWYFFEIDKKQRQIYELVFDIEQKLAKVKDLLNEIYILKAQLETNVNVGKI
Ga0208151_1004768	F097670	N/A	MNYKVFDKDIYTETDEIITINLKTGEIKHETKMYFYDEKELKEIKDLQEYNLKLYEISQKIQEEFTKFSTKYAKPPIGYIPISNIIYEFMLNKNNIVLIAYANISKVENEISKEITSDTIKIIVKSKTIFNKEWNFESTQNLSPEIKDNITKIIEKALKSAKAILKSNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208151_100476

Overview

Ecosystem & Geography

Associated Families

Sequences