Scaffold Ga0208549_101257

Overview

Basic Information

• Taxon OID: 3300027933
• Scaffold ID: Ga0208549_101257
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8967
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032339	Metagenome	180	Y
F078331	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208549_1012572	F032339	AGG	MRKTSKNEPETRVIYNSRELSIIATIKPRTFSKEENASINKLYLRATLLMFAVTVASIAAALLLTYNAVIVKRILVEQNVFNIPRWATIGFSIGSAEYPLYFTAVFAVLAAIYLLYVRKIKEYRTKSLAIGILLILEFMAMIQPLGDGLNDALTYYYVATHGVHEFNYTTLTGCFYENASANAYIIYVNRSYLHSNTIVANLSKCLPFNK
Ga0208549_1012576	F078331	GGTGG	MPGKNATLVVKLHKCHIFEKAPSSISDVTNETLHEEELASRAQGNEKFKLKKLNVDGFDAELYFDVKDMQQLTFSDLFGLIDQVQADDKK