Scaffold Ga0208429_100435

Overview

Basic Information

• Taxon OID: 3300027932
• Scaffold ID: Ga0208429_100435
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6313
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048414	Metagenome / Metatranscriptome	148	Y
F050483	Metagenome / Metatranscriptome	145	N
F092366	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208429_1004351	F048414	GGAGG	MNFEKLKENASVSLFYSFLLFVLSFIIVIAGLNYIWGKPALVWLPLSVWNLLITLGIFLSIMIILVVVARRLI
Ga0208429_10043510	F050483	AGGGGG	MSYRLIKILRKDGTVKEVKVNPNSFNNEKVTIDNYDYYIPAQAVFEETKGLFFKKKIKTAYVIEGNPKPISWSTPDYSLDKILQSKIDSDLFNKLEKNKAELILWTILGSVIGLLLGFILGHDIFTNTNNYRIVRVVGVILWNLIR
Ga0208429_1004355	F092366	AGGA	MKAIYVLFVALLFLIPITFNNSQASLLSGSSLINEKVNTHIQIYALNLSLPQAWGIYGYYNYSINNKNYSISISNLTDNYYLNLNISYEISLSVNTTLYYNITLYAYKLQDYIALNHLNYKGKLNLLTTQSEYNLTLNASAIQFENVNNFYYFWNQYGYKVIGSILIIGLFLFFISRLRRMR