Scaffold Ga0208429_100402

Overview

Basic Information

• Taxon OID: 3300027932
• Scaffold ID: Ga0208429_100402
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6532
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011097	Metagenome / Metatranscriptome	295	Y
F023140	Metagenome / Metatranscriptome	211	Y
F027904	Metagenome / Metatranscriptome	193	N
F045200	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208429_10040210	F023140	N/A	VLIGLVTVPVYIVLKSSPFLAVFGVGVLTTLTVLILFFYFLGAKFVGIWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLTYFATRWLYVKKGRLNTPNLRER
Ga0208429_1004022	F027904	GGTGG	MEKYNPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPANSAVTLDEDEWSINVKSGYSLAAVSSAANSANVFVKAYFVKGTGSPI
Ga0208429_1004026	F045200	GAGG	MSQGYITEEIGKVTLNQPEVVTLLSPIRDAQYLKSLQNPTSTAPDAGLGVIDNPFFFVAGHYPGGLSPTGAPEDRTYLVWFGSPAGTTNEKPLFSVFYARVHPERYVPNAPAETWLDPPVLLVSYDQISSDVVNWADNVFTSAGYTPSSPGVISVPGNTGYIPNYGYVGYPNSPSPITFNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNNEPYFLGGLKFDSTVEQTIVKALLSIAWGNTMQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNSLYMTAMSGINYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITAYGQAFIAFNGLPENLGSCPSSYGSNTYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGTYVIPITLPPRPDWGGISSIRMKVLYIAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYLDGIAVYLDKTVMSPKGKTLVTVPSFIFGQTSSGGSYYVIAGANGANAIYHGVVAHTFGKKYARVYFNINAGNPAFVNIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPVVERNFGTLVYAADYAYNMPYALEYSRTSKFIVDGQVLWVLTNGSLGPVWVELEGD
Ga0208429_1004027	F011097	GGAGG	MIRDVPLYTSGGTDPFTGLTTGGSTITGNGSNYQVLSFHPNYARLHIYITGLSGTSPSIQFTVGSYFGANYYTLPPITSPQYVYVVGNENKTIITYLNTSNAVLQQVELPYNIFFNGAYVSWTVSGTSPSISAYIHFEFEDEEEGE