Scaffold Ga0208429_100344

Overview

Basic Information

• Taxon OID: 3300027932
• Scaffold ID: Ga0208429_100344
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7091
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018963	Metagenome / Metatranscriptome	232	N
F033507	Metagenome / Metatranscriptome	177	Y
F040183	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208429_10034411	F040183	N/A	MKIKYPFPQRIHYLTVLGHYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVESQNVNVNSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINGASTALGNVNVPSIWQVRFAITGTSPSFSIVGTYEARE
Ga0208429_1003443	F018963	GGAGG	LDTLGDRPVGAKLMFPYVRGEDGSVTDTLIMSFRTGRIVHSKLSVNKYGHGYRAYTLLPANYLMYEAYRTGRGRASIKVSVIDVSPNPLSPYRVKDIWVMYEGVSPVTLLEDLPGNIRVIIEGNSGELPLYEYLETEVPK
Ga0208429_1003445	F033507	N/A	MVRSNIAEVVASTTSSGSGGTLTVNLSVTSGSGVTQIDGVYYLNPEANGYYTCGLQMNNQSVRYSWTLHVSATPTSLANGATVFVEVTYFDTYPGKPYYSETYPFTLNSNGQDSGEFSVCMVPSTIFPESSVGVKVVGVKSATDQSIPYTSSGITIIPQ