NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_100067

Scaffold Ga0208429_100067


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_100067 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15412
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified archaeal dsDNA viruses → Sulfolobales virus YNP1(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075083Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0208429_1000679F075083GAGGVDLAEIDLTEMPETESQKQIQKQKLIDSLRELDIDFEKGEDSVRIKGLAGFVCCGNIVVYQIPDRKIVFEELGDANRIILNSTDEIKPGIKQILLDKSVYARYDFPYLIIQF

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