NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208312_105092

Scaffold Ga0208312_105092


Overview

Basic Information
Taxon OID3300027931 Open in IMG/M
Scaffold IDGa0208312_105092 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042426Metagenome / Metatranscriptome158N
F061049Metagenome / Metatranscriptome132Y
F063847Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208312_1050922F063847AGGGGGMRFKRYVFCYDVYSVSNDRLETHKVSVYAKSLKEAKSKLERLGYKNIYQKKKRKVNY
Ga0208312_1050923F061049N/AMPIFIIKFEKDNLILKEWVSEGEEDLKKALIEMLDIDFQFIKKIRGFKK
Ga0208312_1050924F042426AGTAGMEGNVKRLMDLPLKSIYTVGQGETKSGFEVYYLFEYKSGNFSEKVDNVYMIYATTILGEWITENFDKLKKAIFELEIEFRDSQYNKKVPVPVKVRKIADKPKIPVSVEEEGF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.