Scaffold Ga0208312_105092

Overview

Basic Information

• Taxon OID: 3300027931
• Scaffold ID: Ga0208312_105092
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042426	Metagenome / Metatranscriptome	158	N
F061049	Metagenome / Metatranscriptome	132	Y
F063847	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208312_1050922	F063847	AGGGGG	MRFKRYVFCYDVYSVSNDRLETHKVSVYAKSLKEAKSKLERLGYKNIYQKKKRKVNY
Ga0208312_1050923	F061049	N/A	MPIFIIKFEKDNLILKEWVSEGEEDLKKALIEMLDIDFQFIKKIRGFKK
Ga0208312_1050924	F042426	AGTAG	MEGNVKRLMDLPLKSIYTVGQGETKSGFEVYYLFEYKSGNFSEKVDNVYMIYATTILGEWITENFDKLKKAIFELEIEFRDSQYNKKVPVPVKVRKIADKPKIPVSVEEEGF