Scaffold Ga0208312_100352

Overview

Basic Information

• Taxon OID: 3300027931
• Scaffold ID: Ga0208312_100352
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024140	Metagenome / Metatranscriptome	207	Y
F067920	Metagenome / Metatranscriptome	125	N
F084461	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208312_1003523	F024140	N/A	MNWKPTSLSHIFSILGIMISLLGINAITFYYMHTLNNMQFFFMSLVNITGLIGMAYYMVSFSANEKGVTIQSKPETTT
Ga0208312_1003526	F084461	GGGGG	MSLDLGTLLKNNKATLQTENGKIVLRISFDDLVQAIYNGLPEQSKKVVSVSHDGKQIIISFDASILSGMVGIIAR
Ga0208312_1003527	F067920	N/A	MPADLIFGISDQGLFGAISSVLEYILSFLKTLVEQASIYAVDFLKEMWSNPTQTITFLTLLGVVLA