NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208312_100222

Scaffold Ga0208312_100222


Overview

Basic Information
Taxon OID3300027931 Open in IMG/M
Scaffold IDGa0208312_100222 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5671
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072527Metagenome / Metatranscriptome121N
F099550Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208312_10022215F099550AGGAGMYLTDEIKKLLATKHKSMQIVWVPLPVLDEIAQIAEQLHLALNQTIIVLVIHALRESTPQPNNGVGHYLCPICLQEFNIADDFLAHLRGDENVKIKPHV
Ga0208312_1002226F072527N/AMSQQPNRLAELLQQAVLAFGAERVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCIQATFYLQINKALRGVTQ

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