Scaffold Ga0208312_100214

Overview

Basic Information

• Taxon OID: 3300027931
• Scaffold ID: Ga0208312_100214
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5743
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208312_1002141	F081547	N/A	YLSCGIVNGGNLDAETYTIKEPELMMVRLGRDLYIVTSELKLIIPVEPVRVLLNSETSKVYNEMLSQGNEVKPA
Ga0208312_1002142	F087442	GAGG	MMREGLVKAGNLIIDCKPCYVAGTGFTKDDIYVISEGTVVFKWYDKIAVVVVGEEGTKVNLLDIVDVRFLVERNESCMVTKL
Ga0208312_1002143	F080245	N/A	VWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHTLLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
Ga0208312_1002144	F075084	AGCAGG	MIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKVFTKMTEMCSTYEVR