Scaffold Ga0209536_100678628

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100678628
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017635	Metagenome / Metatranscriptome	239	Y
F057323	Metagenome	136	N
F068778	Metagenome	124	N
F099219	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1006786281	F099219	GAG	MIPTGLFTRTIHGYDEWLNRYNPYDDEIDEELEEHLEKMREMDNIDDQKDYCDDHHLKYGDIEAYLXWYLLGSGGRHHTN
Ga0209536_1006786282	F017635	N/A	MTSSNNEPTFLDMNDLCDQSLEALIQHYLKLKHRMPDNISVRERLLELEREQFKREREASTIEGVIRQNTDNPLXA
Ga0209536_1006786283	F057323	N/A	MKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWLKENDIKLSLPDHVTDTYSFMDWFYDAENSLEIGTDFFVNLQYKELLSEXALPST
Ga0209536_1006786284	F068778	N/A	LLGNKNIVDWGVFAEVEDSTDTELTQQIELVLPDHIQQQIYKLITDNIDQAKAIEAMAQF