Scaffold Ga0209536_100560234

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100560234
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1424
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F012670	Metagenome / Metatranscriptome	278	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1005602341	F099270	GGA	MTTNFQFAQAPNRKGNISKHAPSKSGGATNVTGAAHGTATPKGNQGAPKANGNVYPVGNKVSVSTHADYCGTIKNDGYLKN
Ga0209536_1005602343	F012670	AGG	MTDIFGEIRPEGAPVTTEKQRQHSKAQYAQKKAMKIATGQRDPRDTLSDNPQNRNTKGRPKSIVNRVTEYGALFNSLNEERLKKGLSPLRTAMDVLIEAMNSDELELKEKAKIAEKLATFESSRAPIISIEHVQNISKEEEVTADEALDDFLQSLRKV
Ga0209536_1005602344	F001915	N/A	WYKIFSPKTFDCIAMEWTLAHPLHDVEDMVLLADQVYGQEVDGILKRDRAVFRKNLTIATTVQVFDKGREFIAVCRNIPVPFGDNGLLGYCWFDRGGYTTYSSEEISNAKFHHLDLSLPAKQRVRMINEMIDQHILWAYTWNIPIICSTSIRSEHDGFMRIHKKRGFMVNGSYAWIRTEEGMKGLK