Scaffold Ga0209536_100493804

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100493804
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1528
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002738	Metagenome / Metatranscriptome	533	Y
F015987	Metagenome / Metatranscriptome	250	Y
F017987	Metagenome	237	Y
F044444	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1004938041	F017987	N/A	CKRTEARNASPSGTPNKCVAWWYAPPSDATSDGRFVLLHTKHGAQAPLTHWRTYKQKEVFSQHHAWDLFFNMMEAGYVPFPGISLPQLKSTIKK
Ga0209536_1004938042	F044444	N/A	MTDDILEYARQLAMQPMTISHLRYELDIPEDTHWELVKLAADLKMHHEDYAINVLIGHVESELDRKAQA
Ga0209536_1004938044	F002738	N/A	MSIDTYGLSSEQYTEFFHKNVRFAAKLYLDTCTILNEEGVGNIDFKTVLDMYQEAVYTANDDCRRYQKSNNPEALKDGDLYNISPTREEIMEEIQSVNAKVEALTDYIGNLVTVTTAGLEGIATTLDDKVD
Ga0209536_1004938046	F015987	N/A	MSQITQAKLKDLSVIKLYEHYDALEKSLPLLTPESQELAKAELESCASLRSEKIDRVYYAMASHEDAIERIKKEGDLIAQAKRHHESQLRSLK