NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100212960

Scaffold Ga0209536_100212960


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100212960 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2425
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036487Metagenome170Y
F098261Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1002129605F098261AGGAMGLMDIDQLIDMIKERSRLDIYYNPQFSFRGSAEQKKEFQTYLCDTAEVKWVDILKSIQREYSDMKVDQVIDMIEDDTFMGIKVVYKPITTFSKWDRWEDGYIEGYLRTMTSPDYFIWTYHKMGKLKSLLSDFPELKLLGST
Ga0209536_1002129608F036487N/ANQGWSEGFKAGWKASLEEMKARLKEYKEAEQGFSEYQHAMDEAIELIDWLSGNKKDRPE

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