Scaffold Ga0209536_100169469

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100169469
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2751
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052473	Metagenome / Metatranscriptome	142	N
F068559	Metagenome / Metatranscriptome	124	Y
F090087	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1001694691	F090087	N/A	MHCYKKQQKVRIFGKGCGHMYKIEGEGVVADIFKGIMKAGKRLFSNLKVKELAAATGKSLLKAGKDFAAKELVPSLKKAGTKIATKGIEEASNRIVAQIEGTPAKKTDFKKEVRDISLEELNKLKQRVKVIAAREAKLAKGRAIDNLKNLDVVEQQYEKIEDALDYTQNGSGLVRLGSSRPRKKRGRPRKRT
Ga0209536_1001694693	F068559	AGG	MPKLIKKNTGIIANLNNLGESGSHWVCIVRKNNKILYYDPFGVIHIPKEIEKSILNSVDEKNIFVSNGQNQHLISILCGYYCLKICKSILLDNMTFEKSIKQFTDEPSDKNADIADNLFI
Ga0209536_1001694695	F052473	N/A	MDSILLNINTHDLNISNTSNFSIQFDALQLDRNSDYHIALVSYNVPYSWYNISASQGNNQFRYSRDGGVSFRTVTVPDGNYGVEDLNLELDALIVADGGATGKILFYADYNSLRVDLEITDVNYQIDFRDANSNNFRTIMGFADQLYIGVGVSRAPNPANITNNIDSVSINCSIVDSGSVLLNNRQSSSLFHISDYQSGPGSYLTGRPSNPVYLPINVA