Scaffold Ga0209536_100119435

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100119435
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3343
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008548	Metagenome / Metatranscriptome	331	N
F015588	Metagenome / Metatranscriptome	253	N
F027780	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1001194356	F027780	AGTAG	MLSLWAVPIGARTFQKKYNAKQIPHVTLLENLKPEKRAHEFFPTTMNLKAQSTEMVVRKMKDKYEYGWVFEYEGGDLFMTCHEVDKGEMPAMDIRKLDEKVLNTVVTYSIDGILVDPSDLDTVWAYDSDEVWF
Ga0209536_1001194357	F008548	AGGA	MKSIYKMDILPLDLQCDILKRATILDLKENPFKPKYKVGFTFGINAVITLEWDNDLVEDDPWGFLDMIRHYYDKSIEDYEDHIFKMVEEEKKNYEYHVGLDGELFSRLYQENEHMLTFKFFIRSGDTMLDQQDLEFFKSMEPHLDKGYIMYQLVMLTQFLRDTYSIEFLEKYNEYVLREEGFDETEW
Ga0209536_1001194358	F015588	GAG	MDTLPPELVHNIFTRACMMEMEEKFPLNYRFYTDHGEIEFSSNDLVVRKDRVIADLSNFVYNHIFTSMRLPILHFEKRIGNKVVYSQHVHLWNDEIIQRHTGKIPKSPLESYLWNMMM