Scaffold Ga0209536_100116711

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100116711
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3388
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F049595	Metagenome / Metatranscriptome	146	N
F064194	Metagenome / Metatranscriptome	129	N
F067690	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_1001167112	F067690	GGAG	MDKVIELELELRDGGSYYLCDSKFSVMSGKIRRHVNALESYYQDYASVNGFAVKHTYEEVVEMIRKAKGAK
Ga0209536_1001167113	F049595	AGGGGG	MQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTEDFHIRWGDALVIDHRFANDIAQQLIEEGWVIE
Ga0209536_1001167115	F064194	AGG	MKTYLVEINAVVWKQIEVRAESVEAADKLAHELFDLATDACPEWISLRYDQETKMIWEDDTQNIRNWKEVM
Ga0209536_1001167117	F026437	AGGAGG	MKYYIGNIDEQYGEFEVQQSILFATAGDPDEVMEVIAKDWYGLDEHDSMGLPEGMYWNDGMAYGAGRHYEVTKATYDELKDKRVFTEMWEDNDD